Scaffold Ga0207880_1003708

Overview

Basic Information

• Taxon OID: 3300025247
• Scaffold ID: Ga0207880_1003708
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2870
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -5.7497
  • Long. (^o): -170.7411

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025388	Metagenome / Metatranscriptome	202	N
F077940	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207880_10037082	F077940	AGG	MAKKQQELSLPDQIAEVVSTVAPPLAAPATAPEVTSEQIAQLILKGSDATKAAIRKALDLDHTHTRESKSAMTNSQVRNTVRAIGEVTHIEGYMPSPPSRISDHGPEAVAVWEQRWKDNNGDNLSEYDLDHMALDAHM
Ga0207880_10037084	F025388	N/A	MTNLEVMQTALRRVGLNVGSSTFKNGARTYLNMVGKDIQSREKWNWMFKASTFDTVDGTQAYSLASDAITPLSFRNTTQNHVIIMMSSQDLDAADPDHSISGDPTWAILDGVDSSGYTQIALYPKPDSADTIAYRYYSLVPDFVESNDTDSLDGYYSPIVQPALVYGVASLYKEEKGDDQGAVADRQEMERVLAVASRQNANAQGNRIYRMRRSDEVGHFGFSPQEGTLT