Scaffold Ga0209646_1000069

Overview

Basic Information

• Taxon OID: 3300025246
• Scaffold ID: Ga0209646_1000069
• Source Dataset Name: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 230340
• Total Scaffold Genes: 217
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 161 (74.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9082
  • Long. (^o): -79.0499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024826	Metagenome / Metatranscriptome	204	Y
F040712	Metagenome	161	Y
F052031	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209646_1000069170	F052031	GGAG	MTIDLPATHPAATEHHEEIVQFVFRSAASPGLLAHARALLGAAPKELAESFEQAVRSAGLAS
Ga0209646_100006970	F024826	GAG	MADATPYFGIAPFVLGMTRELARAAAGKPDSVETTSDDEGAAVETWFYDGGEIELEFDPAPEAKLESITAWSDKTTVNGVAIIGCELGDLQRLAKQADIHDLELTDDFADSGQCWQSEQHGLMFWAAKGKVVNMTIFPRFDDSGEEPQWPE
Ga0209646_100006979	F040712	GGCGG	MAGRPAAGENGALLIRLPASMSLRCFIVRRCLHASLEAVGLRAVNLPLVVDARRHVHPPVPLDAGYLVVDRRAFARITFPRADGREAATMQTVGFASLSGVLRAICAERIGLAGRAAIPGPRRALELRREGRWSEVLEASERVEAPMRARLDAWLRSWRFATWRFALQAFKRL