Scaffold Ga0207908_1034229

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207908_1034229

Scaffold Ga0207908_1034229

Overview

Basic Information
Taxon OID	3300025244 Open in IMG/M
Scaffold ID	Ga0207908_1034229 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-81 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	647
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-28.4105	Long. (^o)	179.1447	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036734	Metagenome / Metatranscriptome	169	N
F046644	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207908_10342291	F046644	AGGAG	MPLTRSVLVSTPLLKSEELGSVWRDRPFKLQVGQVDVMLSYAELSKLIADADGEIRDYLGDEHA
Ga0207908_10342293	F036734	AGGAGG	MSNRRFLRSVLTTEPDLDPPEPVIGIRNRRWREQEYTYEQYRHDEEMYQEEINTWRMYDAADQLENSLLEQE

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