Scaffold Ga0207908_1032701

Overview

Basic Information

• Taxon OID: 3300025244
• Scaffold ID: Ga0207908_1032701
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-81 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 664
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -28.4105
  • Long. (^o): 179.1447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022976	Metagenome	212	Y
F025850	Metagenome	200	Y
F083246	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207908_10327011	F022976	AGGCGG	MTLTVKTKDWAAGRRWARRNAIATPGVTYTIVRDGRHLSYRYEDGLMYCTGTGKRVEPYRPALARLTASE
Ga0207908_10327012	F025850	AGGAG	MEESMTSEGPKTPEQYFQNGRAWLDAAEDMAEGNQDAATLAILSMASALLGICAQFIREQGDD
Ga0207908_10327013	F083246	N/A	LSARRYTVQGDRRIKLESKDDFKKRSTGGSPDDADALAMCWAAQGPGVGVW