Scaffold Ga0207908_1016539

Overview

Basic Information

• Taxon OID: 3300025244
• Scaffold ID: Ga0207908_1016539
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-81 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 999
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -28.4105
  • Long. (^o): 179.1447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054107	Metagenome / Metatranscriptome	140	N
F081448	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207908_10165392	F081448	N/A	VKALDVLTDIIKNKNLSKEYALQESKDLRILSPKKDTALACLLSGIESVETIPEWVKTSWFNWIYYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPKEKRPAAEALLQPHLLKLKGSRTTMEETLKEWRI
Ga0207908_10165393	F054107	GGA	LKKEKPEPKVNAAAGNFVNAVQTGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLVNTPPPEVQGSEAERNQPMTKGDFFQIIKDGIQLLRQQTAGVDPRIERAIDMQDKLVDAMWEKMARALISDKDTSPGVN