Scaffold Ga0207908_1011701

Overview

Basic Information

• Taxon OID: 3300025244
• Scaffold ID: Ga0207908_1011701
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-81 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1237
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -28.4105
  • Long. (^o): 179.1447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056665	Metagenome	137	Y
F072515	Metagenome	121	Y
F092719	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207908_10117011	F072515	N/A	SGMGAIDAYKLAYPKAQSDGYVKKRIDKLLKTEKIQKMVKEEIREILDDEGVTNNWLIERYKTIADLAESDTAKLRSLDSLAKISGLFDTEEKKSEQVTVWAGFKPEQLEEVEKHGKPELIAHAEREE
Ga0207908_10117012	F092719	AGGAGG	MANQNLSPMQNEKNNNDDIPLEDPCPVCKEELYLNNEYTQRIGLIDDLDKVIGWICPHCKTEYDNDTKIVRFLGDPCIGGEA
Ga0207908_10117014	F056665	N/A	VYETLFILLIAVLISLEVERAKPKPVPLGGGDTLMVRITGYAFCPLYCDANHNHIGHYKNYNCEELKCEHITINEE