Scaffold Ga0207908_1003486

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207908_1003486

Scaffold Ga0207908_1003486

Overview

Basic Information
Taxon OID	3300025244 Open in IMG/M
Scaffold ID	Ga0207908_1003486 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-81 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2635
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-28.4105	Long. (^o)	179.1447	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082793	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207908_10034864	F082793	GAGG	MAEVIPSKDEIIHAESLALGSSAENLVDAGATIPQNAGDVIVVCPSGDSLHWGPSVTPTSSLGRPITLGHPGRIPHTFNKTAQLISDDGSDV

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