NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207893_1049091

Scaffold Ga0207893_1049091


Overview

Basic Information
Taxon OID3300025241 Open in IMG/M
Scaffold IDGa0207893_1049091 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)10.0693Long. (o)-99.2557Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026025Metagenome / Metatranscriptome199Y
F089401Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0207893_10490911F026025N/ANKTHNGNPNKFTHLRYGVFDKNSKFLVSKNMIVFLDTTVHEHRHMKLTNIFAITNITRLDEEQEQQTPSDTCRSKTCENNLIGYQSQIDKRYCSDCV
Ga0207893_10490912F089401GGAMSEKNICQNPKCCNATSLDRWNKKINKYQSRKARNKPQPSYKYRSVILEYFCTTSCAWNWAENNLENIIERKDCPNKILDKIIRA

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