Scaffold Ga0207893_1014558

Overview

Basic Information

• Taxon OID: 3300025241
• Scaffold ID: Ga0207893_1014558
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-121 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1077
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0693
  • Long. (^o): -99.2557

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017717	Metagenome	239	Y
F026025	Metagenome / Metatranscriptome	199	Y
F101317	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207893_10145582	F017717	AGG	MFKLDKKAYGGNPTTELIANVVHELGHMFDVLSVKILENRKRIMTLERKIKELERSKDVI
Ga0207893_10145583	F026025	GAGG	MLFKRGDRFTLVVKNKTHNGNPNKFTHLRYGKFDKNSKFLVSKNMIVFLDTVVHEYRHMKLTNIFAITNLTRLDEELEQQTPTSVCRSKTCDNALVGGWVSKFDARYCQDCL
Ga0207893_10145584	F101317	AGGA	MSEKNICQNPKCCDRDTLDRWNKKIDKYQSRKAYFKSHNEYGSTMLEYFCTTSCANQWLNNNLESIIDHRGTWQKILEKLIRS