Scaffold Ga0207893_1009888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207893_1009888

Scaffold Ga0207893_1009888

Overview

Basic Information
Taxon OID	3300025241 Open in IMG/M
Scaffold ID	Ga0207893_1009888 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-121 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1293
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	10.0693	Long. (^o)	-99.2557	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020789	Metagenome	222	N
F063764	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207893_10098882	F063764	GGAG	MSESIKYFRQKKGTWIWVYDMETNRRKKLELQLLLDRVNHTLRHENKMYFALEQERDKFREDCR
Ga0207893_10098883	F020789	AGGAG	MANNTNKYFTWYVKSRNKVCTFLGADEFEGFVSTQWPDRNGNDCYNFWDIEAKHPRTMVNGKWRNA

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