NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208203_1025623

Scaffold Ga0208203_1025623


Overview

Basic Information
Taxon OID3300025240 Open in IMG/M
Scaffold IDGa0208203_1025623 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP2914 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of Santa Cruz de la Palma, Atlantic Ocean
CoordinatesLat. (o)29.97Long. (o)-23.69Alt. (m)Depth (m)4003.49
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004989Metagenome / Metatranscriptome416Y

Sequences

Protein IDFamilyRBSSequence
Ga0208203_10256232F004989N/AIELEDLNNEKERLEGDRKSLLERLQEYQQGLTQTQQQIQAIGGAIQTCNFFIGKIQSPQESEDEKKSSDDDDS

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