Scaffold Ga0208203_1015524

Overview

Basic Information

• Taxon OID: 3300025240
• Scaffold ID: Ga0208203_1015524
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP2914 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1412
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West of Santa Cruz de la Palma, Atlantic Ocean
• Coordinates
  • Lat. (^o): 29.97
  • Long. (^o): -23.69
  • Depth (m): 4003.49

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F018553	Metagenome / Metatranscriptome	234	Y
F022673	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208203_10155242	F022673	N/A	MKKEQIVNPRIEIAEKIHDKLRASLELERKLLKKELTLQETMQERVIVRNDLIKCERKIKDLTEQLQKENNRSKGTKWNQQS
Ga0208203_10155245	F018553	AGG	MLCIPRLRIAILNEEIALWEKRCDTEPRSNLYYGYIRDMMKGRVKELEENERLD
Ga0208203_10155247	F005464	N/A	IKSKDMYLKVAGWALSLLCMSAGTYFLWPHIHVALLGIVLFYLGIRIFNFSTFEEYKEKRMKLLLKYLK