NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208203_1013445

Scaffold Ga0208203_1013445


Overview

Basic Information
Taxon OID3300025240 Open in IMG/M
Scaffold IDGa0208203_1013445 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP2914 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1606
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of Santa Cruz de la Palma, Atlantic Ocean
CoordinatesLat. (o)29.97Long. (o)-23.69Alt. (m)Depth (m)4003.49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054156Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0208203_10134454F054156N/AWEHGDDLCDCTFQRIGYWTNPYLARTMEVRLCCMWKILAEQNPEIAALVREIPAYDDYNGKRWVSEPAAWNSKEADMPRALWHRQLSIQQDKPLEQVRREYDHLEPPRRVRHGHTAKV

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