Scaffold Ga0208203_1002123

Overview

Basic Information

• Taxon OID: 3300025240
• Scaffold ID: Ga0208203_1002123
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP2914 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7106
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West of Santa Cruz de la Palma, Atlantic Ocean
• Coordinates
  • Lat. (^o): 29.97
  • Long. (^o): -23.69
  • Depth (m): 4003.49

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F011620	Metagenome / Metatranscriptome	289	Y
F019388	Metagenome / Metatranscriptome	230	N
F029556	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208203_100212311	F019388	AGTAG	MQDRFSLIGTVMQTPNEQNPYLVETKNGQILKFSKIDADNEAATKQLDGDDVEVFHDGKLQYRLHGIEQGKLF
Ga0208203_100212312	F011620	GGA	MFDKILQAVLKFFGKEKPEPPTEEKNESLEALEKVEALDKIGESS
Ga0208203_100212313	F029556	GGAG	MSMMKFDGSKIKEIRKRKEQGLPSPPTDGDVVEQSKNAKGGSELIYQRVKERVPDDLWNYFQIILSKVRELEDKPKILWFQDTSKDQEIQFLKKKEERDK
Ga0208203_10021236	F001334	N/A	MMKFKEYLQIYADDSIEQIMSGEWISKSRSTWKATDDEDNSLEIHNDGHDPELNGESWTVHNNTFAPKAFAHFCKQFIKKVRPAELSYARTRIYPSTSN