Scaffold Ga0208031_1026995

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208031_1026995

Scaffold Ga0208031_1026995

Overview

Basic Information
Taxon OID	3300025237 Open in IMG/M
Scaffold ID	Ga0208031_1026995 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	762
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Orkney Island (southeast)
Coordinates	Lat. (^o)	-61.27	Long. (^o)	-43.92	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F024420	Metagenome	206	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208031_10269953	F024420	GGAGG	MTIYEELRQIINRNSCWQEEGRKFELLWNLILSSDKRSFSEYFEEEHSIKLYDAMTFKEILILCRDYNVGGRFK
Ga0208031_10269954	F010277	GGAGG	MSIALKDKLEEVSVFVGEQLKDYTNEQVIQKVRKEFGLQMYVDHAEELLHEFQQEIRSEKAVAWEAIQW

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