Scaffold Ga0208031_1000543

Overview

Basic Information

• Taxon OID: 3300025237
• Scaffold ID: Ga0208031_1000543
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6908
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Orkney Island (southeast)
• Coordinates
  • Lat. (^o): -61.27
  • Long. (^o): -43.92
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028320	Metagenome / Metatranscriptome	192	N
F096075	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208031_100054312	F096075	GGA	MKYHSKAYYSTQEATELMFGDTPSNRKRLLRLLQSGEVKGKKFGKRWFVYASEIKGESYEWS
Ga0208031_100054313	F028320	AGGA	MSNRYIKTANITLYPNSEGKATHGNSNWKPYKDGSPADIHLRKDAKYSVKLFGNDDGTFGLSISEVVVNTYTDSISDGVSQPAMRSLAETIDPPKSPIAEMSSGLSDDEIPF