Scaffold Ga0208031_1000269

Overview

Basic Information

• Taxon OID: 3300025237
• Scaffold ID: Ga0208031_1000269
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11895
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Orkney Island (southeast)
• Coordinates
  • Lat. (^o): -61.27
  • Long. (^o): -43.92
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F018209	Metagenome / Metatranscriptome	236	Y
F023952	Metagenome / Metatranscriptome	208	N
F054158	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208031_100026915	F018209	N/A	MRTQKHDLKDEIKHLEIGLHKAEQDSDAITVFVISERLDVLKSTLLNID
Ga0208031_100026919	F054158	N/A	MRKIKKPLNDKIKFIPCNENKLINSYTRTDKKSTRFEKLNK
Ga0208031_10002697	F023952	N/A	MIGSPIYTKSFWGKGACNNNVGWGIIYRPFAGCSAVPALLVLLQARATYYENVTCTTATLDELENIT
Ga0208031_10002699	F000751	N/A	MMQIYKTNFPTEQQGKDYLLNLGVILEVDDDEGKEIVFAKNTAAVVYIGKVVKIPATYDADGNILTPAVFYDGYAISDLLSFGTFEVFPADKAAHTFYGWARDAEVPPTKELKDIPTKKK