NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208837_1053350

Scaffold Ga0208837_1053350


Overview

Basic Information
Taxon OID3300025234 Open in IMG/M
Scaffold IDGa0208837_1053350 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP0327 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameEast of Recife, Brazil, South Atlantic Ocean
CoordinatesLat. (o)-9.12Long. (o)-30.19Alt. (m)Depth (m)4001.48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034701Metagenome174Y
F101847Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208837_10533501F034701GAGMALVKATMMMELAAAFAAPAADPMKPGKDIAKAFKNYLMMGMNTGGFPTANVVDAPTGMAIGGVFASQLPVGAAIGSQIATALTTMALTYLSGQQIGPPVAPPSHTP
Ga0208837_10533502F101847N/AGKVKIKGVVATLKEILDALIDEILNHTHPTGTGPSGPPMPPATVNLALLKSLKIGMSLE

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