Scaffold Ga0208571_1006166

Overview

Basic Information

• Taxon OID: 3300025232
• Scaffold ID: Ga0208571_1006166
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP0103 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2517
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 21.51
  • Long. (^o): -23.45
  • Depth (m): 4005.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033843	Metagenome / Metatranscriptome	176	Y
F080155	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208571_10061665	F033843	AGGA	MNIRKTVYWIVGLFVFFGWVDLVWGQTEKWSGESVTLYTTLMGFSMIDAKQTFMMDEYRSYFDRIEPITYAHEVNPLMGESPTNDRVVVVKLLSGALTFYGLNKLKEVNRKKALTWLNVFYLIVVIHNNSLGLSINL
Ga0208571_10061666	F080155	AGGAG	MVNTYLSLEYIAIVLFGLIMVLFSIGSFYLSNVDKDKNEY