Scaffold Ga0209674_100041

Overview

Basic Information

• Taxon OID: 3300025226
• Scaffold ID: Ga0209674_100041
• Source Dataset Name: Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 396231
• Total Scaffold Genes: 382
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 269 (70.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.6667
  • Long. (^o): -78.5097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024826	Metagenome / Metatranscriptome	204	Y
F040712	Metagenome	161	Y
F052031	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209674_100041122	F052031	GGAG	MTIDRHATHPATTEHHEEIVQFVFRSAASSGLLDRARALLDAAPRELAESFEQAVRTSGLAS
Ga0209674_100041212	F040712	N/A	MAGRSAARQNGLLLIRLTASMSLRCFIVRRCLHASLEAAGLRAVNLPLVVDARRHVHPPVPIDAGYLVVDRRAFARITFPRANGDAAAPMQTVGFASLSGVLRAICSERIGIAGRAAIPGPKRALELRREGRWSEVLEASERVEAPMRRRLDAWLRGWRFAAWRFALRAFKRL
Ga0209674_100041229	F024826	GAG	MADATPYFGIAPFVLGMTRELARAAAGKPDSVESTPDDDGFAVETWFYDGGEIELEFDPAPDAKLESITAWSAKTTVNGVAIIGAEVADLQRLAKEADIHDLALTDDFADSGQCWQSEQHGLMFWAAKGKVVNMTIFPRFDDSGEEPQWPE