Scaffold Ga0207672_1000189

Overview

Basic Information

• Taxon OID: 3300025223
• Scaffold ID: Ga0207672_1000189
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8638
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001578	Metagenome / Metatranscriptome	669	Y
F017247	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207672_10001894	F001578	GAGG	MAWDGDALAGQVEEIFERQQAIADARAFNNSSTLEERLRSAKFESLRVSRSRIMTQLKAATNPAHRTVLERALKSLNDEMAEDEARG
Ga0207672_10001895	F017247	GGAG	MKMNMKTIPNLVVYSALYAAICGISIWLLVFHPESPTNWVLYILIIGSILAGLVKFALHSRKRHQQSL