Scaffold Ga0208336_1009118

Overview

Basic Information

• Taxon OID: 3300025221
• Scaffold ID: Ga0208336_1009118
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2040
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: East of Porto Seguro, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -15.83
  • Long. (^o): -33.41
  • Depth (m): 4003.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F002745	Metagenome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208336_10091182	F002715	AGG	MPEEELQSVKLEVGLLKNEVEARGRQIDTLLSKLDHTADKLQELTVEIRTLNTRQEDYLRTNTSMSNEFKILHTRIGDLHDKLSSNNRRIEERLDHLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKE
Ga0208336_10091183	F000245	AGGAG	MKTFSRFKEVYSFNASDKKMDAFVVKEIKKRKLAIFPVNATDDYTIKKGKPAFKFPSPSGSMMIHVWLRKMLPSKGQPKGMMAFNYQLEDK
Ga0208336_10091184	F002745	GAG	MKSFKGYLTEFAMQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRATVFHTTDLKIGLKRLKKLEGGKKSISAFFSMMSRYMETGVATGGDVHVVVEMDADVLVSARDDIMSEVDKQGRRWVMMSWFEYQTRERSKFSQVEKDLNTLIADLVKKHIPKDKEIQQTKYFGKDSGTVFDIWGNMKRHLKGDGRKIAAVIKDYFDGVEKIIKKNKEVMGDIFYGYTKSKRMTDNSWDEQIVNNIDIYKIHVIKPHPSSDVWGPDEIKQHITDVHK