Basic Information | |
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Taxon OID | 3300025221 Open in IMG/M |
Scaffold ID | Ga0208336_1005986 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2737 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | East of Porto Seguro, South Atlantic Ocean | |||||||
Coordinates | Lat. (o) | -15.83 | Long. (o) | -33.41 | Alt. (m) | Depth (m) | 4003.17 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F043985 | Metagenome | 155 | N |
F095625 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208336_10059865 | F095625 | GAG | MITSESLKEILRDFSVHKYSTDWEKLVENLMSEFEKTYNEGYSFCKKESELVEKAAESLS |
Ga0208336_10059866 | F043985 | GAG | MKKEFYLSTAVHKLDELIKLEGYKPKSKFGGECTALVVEQQLRECEAPGAIKNDRINEILKKIVEELNSPLASGSEFFRNCRDVVANHHITPPSSWKLKPKIWNYQLGFLAALVKDIISEEKAPPKGDLSHLGYIGDSGKRGNFFVKMTEKVEKDDYVIHKVVDKTGNRGWFYNYKMKDPTRMNPE |
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