Basic Information | |
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Taxon OID | 3300025221 Open in IMG/M |
Scaffold ID | Ga0208336_1001735 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6771 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | East of Porto Seguro, South Atlantic Ocean | |||||||
Coordinates | Lat. (o) | -15.83 | Long. (o) | -33.41 | Alt. (m) | Depth (m) | 4003.17 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005608 | Metagenome / Metatranscriptome | 395 | Y |
F024888 | Metagenome | 204 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208336_10017352 | F005608 | GGAG | MKKATIEVLEEGELIFGSPTVGKYFVRRYEDEVEMGGGFFKTKKEALTHAREYKKSE |
Ga0208336_10017353 | F024888 | GAG | MGTSTMDLKNIYKMVSAEVDARIKIDSKGKTPDEWAQLKGFEDWLGYAAWSRHTGGFYEMAVQMLKAEWKKQDPEEFARQKKIQSDQSLREHSYITLPPEAWPTSVPNKNDFASKFIGNKKKKWQTVHKSNFTAEQLEKVYDDFGVGGEPVEYTW |
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