Scaffold Ga0208336_1001557

Overview

Basic Information

• Taxon OID: 3300025221
• Scaffold ID: Ga0208336_1001557
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7339
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: East of Porto Seguro, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -15.83
  • Long. (^o): -33.41
  • Depth (m): 4003.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y
F006198	Metagenome / Metatranscriptome	379	Y
F011620	Metagenome / Metatranscriptome	289	Y
F019388	Metagenome / Metatranscriptome	230	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208336_100155710	F003285	N/A	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMEKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGIATAIAWLLTNIIPKFLSN
Ga0208336_100155711	F001334	N/A	MMKFKEYLQVNADDSIEQIMNGEWIQKSRSTWKATDDENNLLEIHNDGHVPELNGESWTVHKNTFASKAFAHFCKQFIEKVRPAELSYARTRIYPSTSN
Ga0208336_10015574	F011620	GGA	MFDIILQTVLKLFGKKKLEPPTEEKNESLEALEKVEALDKIGESS
Ga0208336_10015575	F019388	AGGA	MQSPNEQNPYLVETKNGQILKFSKIDADNEAANKQLDGDDVEVFHDGKLQYRLHGIEQGKLF
Ga0208336_10015577	F006198	GGA	MEVVLDVECNNCNADYSMIYDSDNIQTRPEEHAFHCAFCGILMEPYYDEFETE