Scaffold Ga0207882_1048018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0207882_1048018

Scaffold Ga0207882_1048018

Overview

Basic Information
Taxon OID	3300025218 Open in IMG/M
Scaffold ID	Ga0207882_1048018 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-103 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	592
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	21.0597	Long. (^o)	-150.4292	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033219	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207882_10480182	F033219	AGGAGG	MVQIKFVKEIPVINGTYKKDTPHGDIGYQKWLVKKTYEVDMEYEITAKTRKEAEELLERKECVKVDRVDDYGDGKGWRETITGKHVNDMSGDEPT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.