Scaffold Ga0207882_1018455

Overview

Basic Information

• Taxon OID: 3300025218
• Scaffold ID: Ga0207882_1018455
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-103 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1033
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 21.0597
  • Long. (^o): -150.4292

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037678	Metagenome	167	Y
F064624	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207882_10184552	F064624	GGCGG	MTQQQPPATGQVQITADDFNSLMQVDESVRVKVHNIALQRRVAELEEENAELKAQIDGPDTINTTTNNKNDSKLTVVGAD
Ga0207882_10184553	F037678	AGGAG	MATNEAVLAHLASIRGAATTAINNVNHYASNNTDMLSASKATLLATVTTVPAALQHASNCSICRAWDGSAAPE