Scaffold Ga0207882_1013742

Overview

Basic Information

• Taxon OID: 3300025218
• Scaffold ID: Ga0207882_1013742
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-103 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1230
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 21.0597
  • Long. (^o): -150.4292

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027483	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207882_10137422	F027483	N/A	HGKLITTRQPVTGEQMKFDAASMETKGSQFDYLDVSKFERDYLKRAMPFYTWTRKNIPVQLKHLVLNPQRAEKLHLAKEQFEHESGDLDWSDYGAFWGERVPVFLGKETGGVIKAFTLLNIAPMADLQRVLKPKALIAEMVSPLIKAPLEQLTNYDSFRKKPIKAFPGETKDYFGVSLPPRLWHLAQIIVPLTELNRLNPAGVFGQRLRDPTTGMISSTEAYGGLGAMRETAMDAPEIARWIRFFSGGTTFDVDLHKHRYIASRNLKKDAAELIGKMKWAFANSQNERAGAIIEVLEALKRQEITDPFDRR