Scaffold Ga0207882_1012687

Overview

Basic Information

• Taxon OID: 3300025218
• Scaffold ID: Ga0207882_1012687
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-103 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1288
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 21.0597
  • Long. (^o): -150.4292

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025388	Metagenome / Metatranscriptome	202	N
F077940	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207882_10126871	F025388	N/A	MTNLEVMQTALRRVGLNVGSSTFKNGARTYLNMVGKDIQSREKWNWMFKASTFDTVDGTQSYSLASDAITPLSFRNTTQNHVIIIMSSQDLDAADPDHSISGDPTWAILDGVDSSGYTQIALYPKPDSADTIAYRYYSLVPDFVESNDADSLDGYYSPIVQPALVYGVASLYKEEKGDDQGAMADRQEMERVLAVASRQNANAQGNRIYRMRRSDEVGHFGFSP
Ga0207882_10126873	F077940	N/A	LPDQIAEVVSTVAPPLAAPATAPEVTSEQIAQLILKGSDATKTAIRKALDLDHTHTRESKSAMTNSQVRNTVRAIGEVTHIEGYMPSPPSRISDHGPEAVAVWEQRWKDNNGDNLSEYDLDHMALDAHM