Scaffold Ga0207883_1018138

Overview

Basic Information

• Taxon OID: 3300025216
• Scaffold ID: Ga0207883_1018138
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-109 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 957
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.064
  • Long. (^o): -133.3152

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025388	Metagenome / Metatranscriptome	202	N
F039091	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207883_10181381	F025388	N/A	WNWMFKASTFDTVDGTQSYSLASDAITPLSFRNTTQNHVIIIMSSQDLDAADPDHSISGDPTWAILDGVDSSGYTQIALYPKPDSADTIAYRYYSLVPDFVESNDADSLDGYYSPIVQPALVYGVASLYKEEKGDDQGAMADRQEMERVLAVASRQNANAQGNRIYRMRRSDEVGHFGFSPQEGTLT
Ga0207883_10181382	F039091	AGG	MPISAESLKLGPWRAGVNYSLPAEEIGPEGLYDMENCTVGLAGEVKKRKGFAKYNASAMNSGATVTAFGQVHIATADKTFAIAGDKFYDVTGGTATDRSGSVTITAGNDNTWNWVMAGATLVACNGVDTD