Scaffold Ga0207920_1059904

Overview

Basic Information

• Taxon OID: 3300025215
• Scaffold ID: Ga0207920_1059904
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP0204 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 555
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South of Cape Verde, Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.33
  • Long. (^o): -26.0
  • Depth (m): 4002.51

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005685	Metagenome / Metatranscriptome	393	Y
F032311	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207920_10599041	F032311	N/A	MKPNKPAFKFPSPTGSMMIHVYLRKMAPSKGQPKGMMAYNYQLEDK
Ga0207920_10599042	F005685	GAGG	MKKFNEYTSFEDKILTTLKRGPCDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKKKN