Scaffold Ga0207920_1025018

Overview

Basic Information

• Taxon OID: 3300025215
• Scaffold ID: Ga0207920_1025018
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP0204 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1012
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South of Cape Verde, Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.33
  • Long. (^o): -26.0
  • Depth (m): 4002.51

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F015491	Metagenome	254	Y
F024888	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207920_10250181	F002348	GGA	MKPNEKWMKYGGWLLSLLSILIGASFLWPHVHVALLGITFIYLGIRIFNFSTFDEYKEKRMDFILKFLE
Ga0207920_10250183	F015491	GAG	MKKTKRQRRAKVPARPQVTPRKWSKKSARIFDKQFDRFLYEELYVPIKKAWGEGDIAKYERNMYGDSK
Ga0207920_10250184	F024888	N/A	MKEKMDLKNIYKMVSAEVDARIKIDSKGKTPDEWAQLKGFEDWLGYAAWSRHTGGFYEMAVMMLKAHWKEEDPEEFARQKKIQSDQSLREHSYINLPPEAWPTSFIGNKKKKWQTVHKSN