Scaffold Ga0207916_1019263

Overview

Basic Information

• Taxon OID: 3300025212
• Scaffold ID: Ga0207916_1019263
• Source Dataset Name: Marine microbial communities from the Deep Indian Ocean - MP1141 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 879
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.65
  • Long. (^o): 92.99
  • Depth (m): 2402.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074010	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207916_10192631	F074010	N/A	HPKGSIWIGENRNMNDKTLLHSQALSFHENFLDVANDVFTTDKRFADVTEHKWMQPLFDKLMKLLEDVGFGKYYVVQADFNHAKDVPSHHRMLYVPCCTPDSIDLDIQTGEKGIFKLPLKEGSFIVMPENSGIRIISPPGKMFLGLIMGICKEDD