Scaffold Ga0207913_1014078

Overview

Basic Information

• Taxon OID: 3300025188
• Scaffold ID: Ga0207913_1014078
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP2913 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1538
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West of Santa Cruz de la Palma, Atlantic Ocean
• Coordinates
  • Lat. (^o): 29.97
  • Long. (^o): -23.69
  • Depth (m): 4003.49

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002745	Metagenome	533	Y
F006423	Metagenome	373	Y
F076495	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207913_10140781	F076495	N/A	VTVKDKSGKSHTMQTRIRPGDTHVAIMHYDAQPATTFSSAVKAHTNLSFGSEKSLEKQISHAKKKFGLKKVEIQKIDKKYL
Ga0207913_10140782	F006423	N/A	MKTFKQHLDEKTEYYLDTSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVATSGKNSYFERAKLKKTTPEKLEKDATGGQSILSTVDFKKLYKR
Ga0207913_10140783	F002745	GAG	MKTFKSYLTEFAQQSTSDYVFDTHSVNSSSLKIPISTSMFKRIWPDTIRATVFHTTDLAGLERLKKLEGGKKSISAFFSMMSRYMETGVATGDDVHVVVEMDADVLVSARDDIMSEVDKQGRRWVMMSWFEYQTRERSKFSKVEKDLNTLIANLVKKHIPKDKEIQQTKHFGKDAGAVFEIWGNMKKHLKGDGKKLRLVIKDYFDGVEKIIKKNKKVMGDIFYGYAKSKRMTDNSWDEQIVNNIDIYKIHVIKPHPSSDVWGPDEIKQHITDVHKWPMKVWDVAIDLEIYTREVVNAEIRTMGGWSKK