NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207913_1006733

Scaffold Ga0207913_1006733


Overview

Basic Information
Taxon OID3300025188 Open in IMG/M
Scaffold IDGa0207913_1006733 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP2913 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2628
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of Santa Cruz de la Palma, Atlantic Ocean
CoordinatesLat. (o)29.97Long. (o)-23.69Alt. (m)Depth (m)4003.49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018739Metagenome / Metatranscriptome233Y
F025303Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0207913_10067332F025303AGGAGMEKNVDYFDTKAESEKMRNVANMVNDIVNVKPDETLITGDADVVETEELPEPEENLMVELVGKAISAGKPKGFFMQGVQSDDNPKL
Ga0207913_10067333F018739GGAGMTTQNYEPTLDLVKERMAKIDGLIEKFKDLPDVQQKLQGAKDALQESEEEIMNYYDLTDIAKRDLN

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