Scaffold Ga0209824_10019985

Overview

Basic Information

• Taxon OID: 3300025173
• Scaffold ID: Ga0209824_10019985
• Source Dataset Name: Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2764
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Netherlands
• Coordinates
  • Lat. (^o): 52.2278
  • Long. (^o): 5.919

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022846	Metagenome	212	Y
F036167	Metagenome / Metatranscriptome	170	N
F047595	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209824_100199852	F047595	AGGAG	MDFDIGSNQYRNAADGIEIDGMTQFSFEHNRRYNEMMLRGLIFDQRGSLVAKIAENSFAVNLQGEFEMQSEYPVVKLLRRETEEVLLEVKFLDGNHIQIHKARLYTGKGKPFEVTPTLWKLKDETHSGENIDCEGKPVSLK
Ga0209824_100199853	F022846	GAGG	MPLATPEELGEELSELAFGIIEQNWLKEHIGKAVDVKNLDPMQANAAEWELTYLILFAITSGCGTFSATDRDRTTAALKAFHATFLKQIAEQVGTDIIDAHEKNLVPRYRLYGQTLEGEDTTHPYKTRYQRLGEAAAIQILGKPIEDPQTADMFRETIKVIFTEVREAVIKVMRHQQVAPVQGEA
Ga0209824_100199854	F036167	AGGAGG	MRRFTITDIMEGNGQPHPSFTHSATYPVLDVLLPGSGNLPGFLVADDQGRFHLIRMDHCRMGKIEAF