Scaffold Ga0209824_10000002

Overview

Basic Information

• Taxon OID: 3300025173
• Scaffold ID: Ga0209824_10000002
• Source Dataset Name: Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 369180
• Total Scaffold Genes: 374
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 295 (78.88%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Netherlands
• Coordinates
  • Lat. (^o): 52.2278
  • Long. (^o): 5.919

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023073	Metagenome	211	Y
F026080	Metagenome / Metatranscriptome	199	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209824_1000000227	F026080	GGAG	MTSRVRAFKNDLRTGWAIVRRGSADTVDQSIREMELLRRKFDLYQVEDQIRSLLRAAGERAFQVIERTGGNVLDDKELRDIFEKMDQLKQDEARIRLERDQIKDA
Ga0209824_10000002294	F023073	GGA	VGVPASWAWILLVAALSFWGSWEIPTRLPDINDVATTHLFLAPVSLFLFLIVSWLRKRDDDDEGAPSARPFVRRYATLGLWVLAGLHPISCGLYPALFDLDARTVEAVTRAVGTISVGMPRAEVDARLVAMNATLPISMTMDRSRHQQLQDQAARLITEQDATSNRQVWRELSQAPFVFIPWGVKPGEEPDRNARDQVFLRRTRATSDIGVDRIVIRYGPAFMVEEMVYSSNRQLTMERTTCTVHLIVPSSPETSFPYPCR