NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1084735

Scaffold Ga0209337_1084735


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1084735 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1523
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009178Metagenome322Y
F013705Metagenome269N
F016059Metagenome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10847352F009178GGGGGMTIDKNNEGAWRICENINGYLETKVYYFYTKKDAMKNFREYKKNIINKSND
Ga0209337_10847354F016059AGGAMKKYNITASQTIYATYEIEVEARNEIEAENLAMNKSTNEWDNEKFENGDSLTVDQIEVINDK
Ga0209337_10847355F013705GAGGMTNKLQNKIDELIKLEELHNIKEQYKQHKKTKGLYEQIDFKPLPQEIMDNANTDWEGE

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