Scaffold Ga0209337_1078892

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1078892
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1601
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y
F057683	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10788922	F057683	AGGAG	MSIKDNLDRETYGDLMYRLGQMDAILQDLQGTINRFHEESRRIREGQPPQIVRALDEVLRRNTQTQNQQHPMHPPSEEQEE
Ga0209337_10788923	F012625	AGGAG	MDPLHNKTINVGDLVKEHTKHSKGRIGLVHEIISNYYLVIKWLDGSADKRHRNKYEVTKIVKGEAYPNYLQDYIQGKRW
Ga0209337_10788924	F022314	AGG	MVKTREILKLGDMVRLVRHEPPEDAWHDFSKESQDMMGVGLVVSMEELNGYKDVPQKKWVEYTILWSGIGEQLKHLGFDLIKITGEEI
Ga0209337_10788925	F004163	AGGAG	MKQTIEQVKRIVLDLKHYFEKSLPLILIGVALGYAFANHLETQRAEPVEIGFATVEDMSFLVQELKECKDNTLDGSY