Scaffold Ga0209337_1072486

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1072486
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1697
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10724863	F012639	AGGAG	MSANNSGIVLTCSAAFAIAAPVATVISGTMQTSPTVNAVTELQVPLTENWIATDMYILAAAGAGTPTVINPVVSLDKNRGRQLVQTPPLSSMLITNNTRPRFSPQPIGFEGGSIIRTFATSTVLNGGAISTATYFIAISIV
Ga0209337_10724864	F015413	N/A	QILPKGILGKDMLIGSAGTALSVQMGNIVGKFLPLGQLPSGTSSILAGILLQKVGGKSGNLKKLSEGIIQGGIATAMTPFVSGLVPAQFQQVEKVETEQETINPTIKGVMW