Scaffold Ga0209337_1070633

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1070633
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1729
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016690	Metagenome	245	Y
F036313	Metagenome	170	Y
F037936	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10706331	F037936	N/A	KGKIWCKTNVKQNFGSNYNHKPLRSNWIQMVKDHDEPLEVYVSRKNELEAKMFKANLTKGKLSDVGLSDNSKAIQMLNDMLNGV
Ga0209337_10706334	F016690	AGGTGG	MSKFDGVFIFLLGIPVTLMAWITLSEEEGYYMSEAINQGFPMGIAFIGLIGAMGLTLLMTGLFIIHINRNN
Ga0209337_10706337	F036313	GGAG	MRFNYGYQDMASDLIANGNRHTLEKVTNLKEGSCILICKATNETIYSYTSYKDGLNDMAKREYEDTLLDIKEYTYINNKIREY