Scaffold Ga0209337_1063461

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1063461
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1855
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067736	Metagenome	125	N
F077925	Metagenome	117	N
F085682	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10634611	F085682	N/A	IDLSKYEKLIRLGTLTEEYEFAQDELHGILKMQQDWDTEREIFVLLDRIAKELSRRRISSDNKTEFMRRLP
Ga0209337_10634612	F077925	N/A	MVDVNETYKKNLKELVGSAFFSIKYYSTKEQRYKDYGSLRFDVKKHLKGGESTAKEHTFTVYDMSAKHYRSFVVSKTVYVKCGKFYTQDDILSGKKKGLSKLTKMSQVGLSVERANVI
Ga0209337_10634613	F067736	GAG	MSFNPSDEKPLSAYTNEELLGFLGIESTLKDVFRNYNMSDEEKRDFLLEKAEEKNQKYI