Scaffold Ga0209337_1060348

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1060348
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1917
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10603482	F012625	GAG	MDPLHNKTINVGDLVKEHTYSSKGRVGLVHEIISNYYLVVKWLDGSVDKRHRNKYEVTKIIDGEAHPNYLQDYIQGKRW
Ga0209337_10603484	F022314	GGAG	MGGVDILKLGDMVRLVRHEPPEDAWHTFPTEQIDKMGVGLVVSMEELNPYKDAPEKKWVEYTILWSGRKEQLKHLGFDLIKITGEET
Ga0209337_10603485	F004163	AGGAG	MKKTIEQLKRIVLDLKHYFEKSLPLILIGVAIGYTFAQHLEAQTPKEIGFATVEDMSFLVQELKDCRDNSGSLDGSY