Scaffold Ga0209337_1058324

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1058324
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1962
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030886	Metagenome	184	Y
F070089	Metagenome	123	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_105832411	F101902	GGAGG	MRVGNLVKRRDDHAHNGIVIEVAPIETRIDHGDNVCRVQWNDGDVSFEFLKMLEV
Ga0209337_10583242	F030886	AGGA	MGYHDRPPDYVKTGIAVINPLIRIEQKLKKVQDVLDNISDASILTANDLKTKIEKVLKE
Ga0209337_10583248	F070089	GGAGG	VKVGDLVKYESALNDSMDHYTVEHGLVIQISKTGHDTISAQVLFNGGETWWVDSGRLEIVNEAGR