Scaffold Ga0209337_1056466

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1056466
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2007
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F007609	Metagenome / Metatranscriptome	348	Y
F089408	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10564661	F089408	N/A	FCIRFMVTCYNDRPMLRKKYQQEEPDLIEELLNKGRTTAVLSINLKGVSKITDHYIYEVHLLDNGTEKTIPVIAIDVTQALAKLEPHLNIGIPSTTLKWMLGTERNVTATNVNL
Ga0209337_10564662	F007609	N/A	MITLENISTGEVFAGDELEFFVDDDTLIGEVFLDGDLIFQSLDVLDDDQLEHALKLEFKMVEEQEDIFSNFGY
Ga0209337_10564665	F005364	GGA	MKKSDLKNKLKSIVKEEVSSLLAERDYKYGGLLDPTDFDPVDPEVHIIGFGSMTRSALRQEIVRRLQGALKTAKDAATGGNNSYDKFKSLEGVLEPNGVLQQQLKAEREISQQMEELRSQGGRRAIPIPKQK