Scaffold Ga0209337_1051347

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1051347
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2139
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F042624	Metagenome / Metatranscriptome	158	Y
F058451	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10513471	F058451	N/A	KIMTRNQLKQMWFNLPTSTIVTKTILVEMDKYVGRQGQGTVQITNDGPSGFSQFKTHQVNPIEYVLNCKEYKSKEYQLVIK
Ga0209337_10513473	F000126	N/A	MKNNKTNTTNMRDYSITKKTGEWYDAQVTDSYGNKYQNYFEFAHEANDWIYHVWSKEDWFNSVDSQELLYKAIQQCKEIDKNINVREI
Ga0209337_10513475	F042624	N/A	MKKITRCALALSIIFSSCQKDDGLISRNWSSPNFDSFDCNSPVMVGEGGTVGFLPGDTDAQIAAKIRDVWNLPDHYVIFLDPNTYNSEGGKGTAHNINPEYLAFPLHISSMSDKWGWDYYEEYKQDKQAFLDKYTNGKETAGMKLCNLK