Scaffold Ga0209337_1042029

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1042029
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2438
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014072	Metagenome	266	Y
F017729	Metagenome	239	Y
F098070	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10420293	F017729	N/A	MKEGRLSSALQERYGIKNPVGKVLWHSLSESGEIGVYDMKFGDTIVRNLLAEDVNPEIVKEHVTEEGHPARAEDDKDRAK
Ga0209337_10420296	F098070	AGGA	MKITKAKLKQIISEELSSMSEYGGIYEDEPEMADPVVAAIVKVEELRDLVMNGDPGGEGAMAAIDELHDMLKGMQTGAGNEVAMAMSS
Ga0209337_10420297	F014072	GAG	MKLLLERWNKYLNEDLNTATRLSVFDFDETLAFSEGKIDILDQTGNIVDTISIKDHDKWEDDERIKSGELKFEFSDLDVITNPTEIIAITDIMRDRTAHSSTQVMVVTARTSRTSDDIHRYLDAIGVPTDDLYIKGMGDEGLGRGKGGFIFSILEEFPDIRKVEFYDDSQKNITDVNTAKAQALERGMVDVFDVYL