Scaffold Ga0209337_1038951

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1038951
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2561
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030156	Metagenome	186	Y
F044197	Metagenome / Metatranscriptome	155	Y
F052254	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10389512	F044197	GAG	MIKAIRILEVPLYLLVIALGCLEEEATTMAIILILISIARLAVNTITDSSVYKR
Ga0209337_10389515	F030156	N/A	MILLFTATCLVTLGIAIGMYISSQIENHIDKNIKK
Ga0209337_10389517	F052254	N/A	MILSIIGIVFGVTAIGLFIWLKNDQQMSNDLHEAELQHTHQGMNALMNDFNNYQVETGRKIAELEKQLVVKSKENERKIIKLTESLPTIIRKVVGHIEFARPLDKK