Scaffold Ga0209337_1033559

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1033559
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2816
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F001802	Metagenome / Metatranscriptome	632	Y
F007827	Metagenome	344	Y
F038864	Metagenome	165	Y
F058451	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_103355912	F001802	N/A	MKHLKKDYIQLGNLIYRPYTVCELPANFGCIEFNEKEGISEWFNYKGFTYLFEKMAKS
Ga0209337_10335593	F058451	N/A	MTRNQLKQMWFNLPTSNVVTKTILVEMDKYEGRKGQGTIQITSDGPDGFSQFKTHQEFPIKYVQDRINSDVKYKEYKLVIK
Ga0209337_10335595	F000126	N/A	MSKRDFKITKKEGEWYNTIVTDSYGKVYQNWYETASEASDWVMYIWEKEDWFNSVNSEELLYKAIQECKAIDKDKGIGSIL
Ga0209337_10335597	F007827	GGA	MKLTNKQKRSVKRRVQLEQGVSTPGTRVFVSKKIYTRKIKHKK
Ga0209337_10335598	F038864	N/A	MKIDKKLIVSVLELYKLDIVNREIKEHDQSLELLIKVNEQIKLIKEWKK