Scaffold Ga0209337_1032428

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1032428
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2879
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10324283	F016673	N/A	MVSESGLEDIVIKSYLELYLRSLNESRSHKFITIIKNRMLELIKRKQLKNQTK
Ga0209337_10324284	F067830	GGAGG	MDKGKLTIVDEGKILAYRNKTSIEIYPTTKDIGFSEFSYSWEEIITIGKKLEELLEKDLANVT
Ga0209337_10324285	F010920	GGAG	MSEIKKYDVLISYPIQVGAEDEAHVREILMASPLLRDAADLTLKITEVKDG
Ga0209337_10324286	F016410	N/A	MRRFSSKKEQLEWADKLLRELSNKNIGGVTPVIKQMIIEQYIGRLKK